Zebrafish

Content tagged with Zebrafish

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New publications from the DRSC bioinformatics team

News
The DRSC bioinformatics team, led by Dr. Claire Yanhui Hu, has recently published two new papers. One reports development of BioLitMine, an advanced literature mining resource. The other provides an overview of our online resources, which can be grouped...

DRSC Bioinformatics launches iProteinDB and BioLitMine

News
We have two new online tools available: iProteinDB and BioLitMine. Both continue our series of resources aimed at integrating existing information in new ways to facilitate data mining and development of new hypotheses. In addition, iProteinDB includes a...

New automated imaging at the DRSC

News
The DRSC/TRiP-FGR is pleased to announce that we recently updated our high-throughput, high-content imaging system. Through funds from NIH, HHMI, and the Harvard Medical School Tools & Technology program, we were able to get a GE IN Cell 6000 automated...

DIOPT 6.0 released -- with eggNOG and paralog searches added

News
DIOPT 6.0 went live this week. Newly added features include results from eggNOG, bringing the total number of alrogithms incorporated in our integrated search tool to 14. In addition, you can now search for paralogs. To do this, choose the same species...

Now Available: Our 2017 NAR database issue update

News
Read about the DRSC/TRiP Functional Genomics Resources online tools and more in our 2017 Nucleic Acids Research database issue update publication. Tables 1 & 2 in particular are meant to give you a quick look at what online tools we offer and how they fit...

"One vs. All" a new feature in our ortholog search tool

News
Our DIOPT ortholog search tool has been updated to include the option to search for orthologs of a gene in all other species included. So you can search with, for example, a fly gene, and see orthologs in human, mouse, rat, frog, worm, and yeast. Click on...

DRSC & TRiP at TAGC 2016

News
We have begun preparing for our participation at TAGC 2016 in Orlando, FL. We will be presenting a workshop on functional genomics for cross-species studies, as well as participating in the poster session. Want to talk with experts in cell or in vivo RNAi...

Bibliographic References tagged with Zebrafish

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Yanhui Hu, Aram Comjean, Jonathan Rodiger, Weihang Chen, Ah-Ram Kim, Mujeeb Qadiri, Chenxi Gao, Jonathan Zirin, Stephanie E Mohr, and Norbert Perrimon. 2024. “FlyRNAi.Org 2025 Update-Expanded Resources for New Technologies and Species.”. Nucleic Acids Research. doi:10.1093/nar/gkae917
Yanhui Hu, Aram Comjean, Jonathan Rodiger, Weihang Chen, Ah-Ram Kim, Mujeeb Qadiri, Chenxi Gao, Jonathan Zirin, Stephanie E Mohr, and Norbert Perrimon. 2024. “FlyRNAi.Org 2025 Update-Expanded Resources for New Technologies and Species.”. Nucleic Acids Research. doi:10.1093/nar/gkae917
Yanhui Hu, Sudhir Gopal Tattikota, Yifang Liu, Aram Comjean, Yue Gao, Corey Forman, Grace Kim, Jonathan Rodiger, Irene Papatheodorou, Gilberto Dos Santos, Stephanie Mohr, and Norbert Perrimon. 2021. “DRscDB: A Single-Cell RNA-Seq Resource for Data Mining and Data Comparison across Species”. Comput Struct Biotechnol J, 19, Pp. 2018-26. doi:10.1016/j.csbj.2021.04.021
Yanhui Hu, Sudhir Gopal Tattikota, Yifang Liu, Aram Comjean, Yue Gao, Corey Forman, Grace Kim, Jonathan Rodiger, Irene Papatheodorou, Gilberto Dos Santos, Stephanie Mohr, and Norbert Perrimon. 2021. “DRscDB: A Single-Cell RNA-Seq Resource for Data Mining and Data Comparison across Species”. Comput Struct Biotechnol J, 19, Pp. 2018-26. doi:10.1016/j.csbj.2021.04.021
Yanhui Hu, Aram Comjean, Jonathan Rodiger, Yifang Liu, Yue Gao, Verena Chung, Jonathan Zirin, Norbert Perrimon, and Stephanie Mohr. 2020. “FlyRNAi.Org-the Database of the Drosophila RNAi Screening Center and Transgenic RNAi Project: 2021 Update”. Nucleic Acids Res. doi:10.1093/nar/gkaa936
Yanhui Hu, Aram Comjean, Jonathan Rodiger, Yifang Liu, Yue Gao, Verena Chung, Jonathan Zirin, Norbert Perrimon, and Stephanie Mohr. 2020. “FlyRNAi.Org-the Database of the Drosophila RNAi Screening Center and Transgenic RNAi Project: 2021 Update”. Nucleic Acids Res. doi:10.1093/nar/gkaa936
Yanhui Hu, Verena Chung, Aram Comjean, Jonathan Rodiger, Fnu Nipun, Norbert Perrimon, and Stephanie Mohr. 2020. “BioLitMine: Advanced Mining of Biomedical and Biological Literature About Human Genes and Genes from Major Model Organisms”. G3 (Bethesda). doi:10.1534/g3.120.401775
Yanhui Hu, Verena Chung, Aram Comjean, Jonathan Rodiger, Fnu Nipun, Norbert Perrimon, and Stephanie Mohr. 2020. “BioLitMine: Advanced Mining of Biomedical and Biological Literature About Human Genes and Genes from Major Model Organisms”. G3 (Bethesda). doi:10.1534/g3.120.401775
Ben Ewen-Campen, Stephanie Mohr, Yanhui Hu, and Norbert Perrimon. 2017. “Accessing the Phenotype Gap: Enabling Systematic Investigation of Paralog Functional Complexity With CRISPR”. Dev Cell, 43, 1, Pp. 6-9. doi:10.1016/j.devcel.2017.09.020
Ben Ewen-Campen, Stephanie Mohr, Yanhui Hu, and Norbert Perrimon. 2017. “Accessing the Phenotype Gap: Enabling Systematic Investigation of Paralog Functional Complexity With CRISPR”. Dev Cell, 43, 1, Pp. 6-9. doi:10.1016/j.devcel.2017.09.020
Julia Wang, Rami Al-Ouran, Yanhui Hu, Seon-Young Kim, Ying-Wooi Wan, Michael Wangler, Shinya Yamamoto, Hsiao-Tuan Chao, Aram Comjean, Stephanie Mohr, Undiagnosed Diseases Network, Norbert Perrimon, Zhandong Liu, and Hugo Bellen. 2017. “MARRVEL: Integration of Human and Model Organism Genetic Resources to Facilitate Functional Annotation of the Human Genome”. Am J Hum Genet, 100, 6, Pp. 843-53. doi:10.1016/j.ajhg.2017.04.010
Julia Wang, Rami Al-Ouran, Yanhui Hu, Seon-Young Kim, Ying-Wooi Wan, Michael Wangler, Shinya Yamamoto, Hsiao-Tuan Chao, Aram Comjean, Stephanie Mohr, Undiagnosed Diseases Network, Norbert Perrimon, Zhandong Liu, and Hugo Bellen. 2017. “MARRVEL: Integration of Human and Model Organism Genetic Resources to Facilitate Functional Annotation of the Human Genome”. Am J Hum Genet, 100, 6, Pp. 843-53. doi:10.1016/j.ajhg.2017.04.010
Yanhui Hu, Aram Comjean, Stephanie Mohr, The FlyBase Consortium, and Norbert Perrimon. 2017. “Gene2Function: An Integrated Online Resource for Gene Function Discovery”. G3 (Bethesda). doi:10.1534/g3.117.043885
Yanhui Hu, Aram Comjean, Stephanie Mohr, The FlyBase Consortium, and Norbert Perrimon. 2017. “Gene2Function: An Integrated Online Resource for Gene Function Discovery”. G3 (Bethesda). doi:10.1534/g3.117.043885
Yanhui Hu, Aram Comjean, Charles Roesel, Arunachalam Vinayagam, Ian Flockhart, Jonathan Zirin, Lizabeth Perkins, Norbert Perrimon, and Stephanie Mohr. 2016. “FlyRNAi.Org—the Database of the Drosophila RNAi Screening Center and Transgenic RNAi Project: 2017 Update”. Nucleic Acids Research
Yanhui Hu, Aram Comjean, Charles Roesel, Arunachalam Vinayagam, Ian Flockhart, Jonathan Zirin, Lizabeth Perkins, Norbert Perrimon, and Stephanie Mohr. 2016. “FlyRNAi.Org—the Database of the Drosophila RNAi Screening Center and Transgenic RNAi Project: 2017 Update”. Nucleic Acids Research
Benjamin Housden, Matthias Muhar, Matthew Gemberling, Charles Gersbach, Didier YR Stainier, Geraldine Seydoux, Stephanie Mohr, Johannes Zuber, and Norbert Perrimon. 2016. “Loss-of-Function Genetic Tools for Animal Models: Cross-Species and Cross-Platform Differences”. Nat Rev Genet
Benjamin Housden, Matthias Muhar, Matthew Gemberling, Charles Gersbach, Didier YR Stainier, Geraldine Seydoux, Stephanie Mohr, Johannes Zuber, and Norbert Perrimon. 2016. “Loss-of-Function Genetic Tools for Animal Models: Cross-Species and Cross-Platform Differences”. Nat Rev Genet
Stephanie Mohr, Yanhui Hu, Benjamin Ewen-Campen, Benjamin Housden, Raghuvir Viswanatha, and Norbert Perrimon. 2016. “CRISPR Guide RNA Design for Research Applications.”. FEBS J. doi:10.1111/febs.13777
Stephanie Mohr, Yanhui Hu, Benjamin Ewen-Campen, Benjamin Housden, Raghuvir Viswanatha, and Norbert Perrimon. 2016. “CRISPR Guide RNA Design for Research Applications.”. FEBS J. doi:10.1111/febs.13777