Online Tools and Databases

If you want to ... We recommend ...
Find orthologs (fly, vertebrates, worm, yeast) DIOPT [info]
G2F [info]
Find disease-related human orthologs 
(start with a gene(s) or disease term)
DIOPT-DIST [info]
G2F [info]
Find RNAi fly stocks (TRiP, VDRC, NIG-Japan)
-or- find cell-based RNAi reagents (DKFZ, DRSC)
UP-TORR [info]
Do a batch query of TRiP RNAi fly stocks TRiP Stock Lookup [info]
Find, nominate, or track TRiP sgRNA stocks for CRISPR applications sgRNA Tracking
Check if an RNAi fly stock has a reported phenotype RSVP [info]
Mine public fly cell RNAi screen data (DRSC) GeneLookup [info]
Mine public fly in vivo and cell RNA-seq data (modENCODE +) DGET [info]
Find qPCR primer designs for a fly gene(s) FlyPrimerBank [info]
Find short guide RNA (sgRNAs) for CRISPR applications in flies Find CRISPRs [info]
Evaluate sgRNAs for predicted efficiency in flies Evaluate CRISPRs [info]
Use genomic qPCR data in a high resolution melt analysis HRMA [info]
Design dsRNAs or shRNAs for fly RNAi SnapDragon [info]
View genes by list (e.g. shared pathway or domain) GLAD [info]
Look for enrichment of protein complexes in a large dataset COMPLEAT [info]
View, build, or navigate signed or directed protein networks

SignedPPI [info]
Directed PPI [info]

Get quick overview of past DRSC fly cell RNAi screens with links to datasets ScreenSummary [info]
Search and visualize insulin signaling network data InsulinNet [info]
Search more than 5 million images from the Neumuller et al. cell screen on nucleolar function at HMS OMERO Image lookup for image data set at HMS OMERO
Report a software bug, make a suggestion, ask a question Bug report form

 

How to cite our suite of online tools and databases

Featured online tool publication

 

Our software tools and databases can help you

  • identify orthologs among yeasts, worm, fly, and vertebrates (e.g. DIOPT)
  • identify genes in specific functional groups (GLAD)
  • identify reagents for functional genomics (e.g. UP-TORR)
  • analyze, integrate, and visualize data (e.g. COMPLEATSignedPPI)
  • get support for applications such as qPCR or HRMA

You can also search and view

Our 'utility tools' page includes batch search tools, common data processing tools, and more.

Click here for a full list of our bioinformatics-related publications. Or visit the individual software tool overview pages (left-hand menu) for publications, YouTube demos, and version information.

Please feel free to contact us with bug reports, suggestions, or questions

For more online tools relevant to the Drosophila community, we recommend visiting the FlyBase home page and the FlyBase resources wiki page. We also recommend checking out BioSharing.org, a catalog of bioinformatics databases, and the GenomeRNAi database of RNAi screen data.