Ortholog identification

Content tagged with Ortholog identification

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DIOPT 6.0 released -- with eggNOG and paralog searches added

News
DIOPT 6.0 went live this week. Newly added features include results from eggNOG, bringing the total number of alrogithms incorporated in our integrated search tool to 14. In addition, you can now search for paralogs. To do this, choose the same species...

Now Available: Our 2017 NAR database issue update

News
Read about the DRSC/TRiP Functional Genomics Resources online tools and more in our 2017 Nucleic Acids Research database issue update publication. Tables 1 & 2 in particular are meant to give you a quick look at what online tools we offer and how they fit...

"One vs. All" a new feature in our ortholog search tool

News
Our DIOPT ortholog search tool has been updated to include the option to search for orthologs of a gene in all other species included. So you can search with, for example, a fly gene, and see orthologs in human, mouse, rat, frog, worm, and yeast. Click on...

Bibliographic References tagged with Ortholog identification

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Yanhui Hu, Verena Chung, Aram Comjean, Jonathan Rodiger, Fnu Nipun, Norbert Perrimon, and Stephanie Mohr. 2020. “BioLitMine: Advanced Mining of Biomedical and Biological Literature About Human Genes and Genes from Major Model Organisms”. G3 (Bethesda). doi:10.1534/g3.120.401775
Yanhui Hu, Verena Chung, Aram Comjean, Jonathan Rodiger, Fnu Nipun, Norbert Perrimon, and Stephanie Mohr. 2020. “BioLitMine: Advanced Mining of Biomedical and Biological Literature About Human Genes and Genes from Major Model Organisms”. G3 (Bethesda). doi:10.1534/g3.120.401775
Hilary Nicholson, Zeshan Tariq, Benjamin Housden, Rebecca Jennings, Laura Stransky, Norbert Perrimon, Sabina Signoretti, and William Kaelin. 2019. “HIF-Independent Synthetic Lethality Between CDK4 6 Inhibition and VHL Loss across Species”. Sci Signal, 12, 601. doi:10.1126/scisignal.aay0482
Hilary Nicholson, Zeshan Tariq, Benjamin Housden, Rebecca Jennings, Laura Stransky, Norbert Perrimon, Sabina Signoretti, and William Kaelin. 2019. “HIF-Independent Synthetic Lethality Between CDK4 6 Inhibition and VHL Loss across Species”. Sci Signal, 12, 601. doi:10.1126/scisignal.aay0482
Julia Wang, Rami Al-Ouran, Yanhui Hu, Seon-Young Kim, Ying-Wooi Wan, Michael Wangler, Shinya Yamamoto, Hsiao-Tuan Chao, Aram Comjean, Stephanie Mohr, Undiagnosed Diseases Network, Norbert Perrimon, Zhandong Liu, and Hugo Bellen. 2017. “MARRVEL: Integration of Human and Model Organism Genetic Resources to Facilitate Functional Annotation of the Human Genome”. Am J Hum Genet, 100, 6, Pp. 843-53. doi:10.1016/j.ajhg.2017.04.010
Julia Wang, Rami Al-Ouran, Yanhui Hu, Seon-Young Kim, Ying-Wooi Wan, Michael Wangler, Shinya Yamamoto, Hsiao-Tuan Chao, Aram Comjean, Stephanie Mohr, Undiagnosed Diseases Network, Norbert Perrimon, Zhandong Liu, and Hugo Bellen. 2017. “MARRVEL: Integration of Human and Model Organism Genetic Resources to Facilitate Functional Annotation of the Human Genome”. Am J Hum Genet, 100, 6, Pp. 843-53. doi:10.1016/j.ajhg.2017.04.010
Yanhui Hu, Aram Comjean, Stephanie Mohr, The FlyBase Consortium, and Norbert Perrimon. 2017. “Gene2Function: An Integrated Online Resource for Gene Function Discovery”. G3 (Bethesda). doi:10.1534/g3.117.043885
Yanhui Hu, Aram Comjean, Stephanie Mohr, The FlyBase Consortium, and Norbert Perrimon. 2017. “Gene2Function: An Integrated Online Resource for Gene Function Discovery”. G3 (Bethesda). doi:10.1534/g3.117.043885
Stephanie Mohr, Yanhui Hu, Kevin Kim, Benjamin Housden, and Norbert Perrimon. 2014. “Resources for Functional Genomics Studies in Drosophila Melanogaster.”. Genetics, 197, 1, Pp. 1-18. doi:10.1534/genetics.113.154344
Stephanie Mohr, Yanhui Hu, Kevin Kim, Benjamin Housden, and Norbert Perrimon. 2014. “Resources for Functional Genomics Studies in Drosophila Melanogaster.”. Genetics, 197, 1, Pp. 1-18. doi:10.1534/genetics.113.154344
Dashnamoorthy Ravi, Amy Wiles, Selvaraj Bhavani, Jianhua Ruan, Philip Leder, and Alexander Bishop. 2009. “A Network of Conserved Damage Survival Pathways Revealed by a Genomic RNAi Screen.”. PLoS Genet, 5, 6, Pp. e1000527. doi:10.1371/journal.pgen.1000527
Dashnamoorthy Ravi, Amy Wiles, Selvaraj Bhavani, Jianhua Ruan, Philip Leder, and Alexander Bishop. 2009. “A Network of Conserved Damage Survival Pathways Revealed by a Genomic RNAi Screen.”. PLoS Genet, 5, 6, Pp. e1000527. doi:10.1371/journal.pgen.1000527
Yanhui Hu, Ian Flockhart, Arunachalam Vinayagam, Clemens Bergwitz, Bonnie Berger, Norbert Perrimon, and Stephanie Mohr. 2011. “An Integrative Approach to Ortholog Prediction for Disease-Focused and Other Functional Studies.”. BMC Bioinformatics, 12, Pp. 357. doi:10.1186/1471-2105-12-357
Yanhui Hu, Ian Flockhart, Arunachalam Vinayagam, Clemens Bergwitz, Bonnie Berger, Norbert Perrimon, and Stephanie Mohr. 2011. “An Integrative Approach to Ortholog Prediction for Disease-Focused and Other Functional Studies.”. BMC Bioinformatics, 12, Pp. 357. doi:10.1186/1471-2105-12-357