Enrichment analysis

Content tagged with Enrichment analysis

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New publications from the DRSC bioinformatics team

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The DRSC bioinformatics team, led by Dr. Claire Yanhui Hu, has recently published two new papers. One reports development of BioLitMine, an advanced literature mining resource. The other provides an overview of our online resources, which can be grouped...

Now Available: Our 2017 NAR database issue update

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Read about the DRSC/TRiP Functional Genomics Resources online tools and more in our 2017 Nucleic Acids Research database issue update publication. Tables 1 & 2 in particular are meant to give you a quick look at what online tools we offer and how they fit...

Bibliographic References tagged with Enrichment analysis

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Yanhui Hu, Aram Comjean, Jonathan Rodiger, Yifang Liu, Yue Gao, Verena Chung, Jonathan Zirin, Norbert Perrimon, and Stephanie Mohr. 2020. “FlyRNAi.Org-the Database of the Drosophila RNAi Screening Center and Transgenic RNAi Project: 2021 Update”. Nucleic Acids Res. doi:10.1093/nar/gkaa936
Yanhui Hu, Aram Comjean, Jonathan Rodiger, Yifang Liu, Yue Gao, Verena Chung, Jonathan Zirin, Norbert Perrimon, and Stephanie Mohr. 2020. “FlyRNAi.Org-the Database of the Drosophila RNAi Screening Center and Transgenic RNAi Project: 2021 Update”. Nucleic Acids Res. doi:10.1093/nar/gkaa936
Yanhui Hu, Verena Chung, Aram Comjean, Jonathan Rodiger, Fnu Nipun, Norbert Perrimon, and Stephanie Mohr. 2020. “BioLitMine: Advanced Mining of Biomedical and Biological Literature About Human Genes and Genes from Major Model Organisms”. G3 (Bethesda). doi:10.1534/g3.120.401775
Yanhui Hu, Verena Chung, Aram Comjean, Jonathan Rodiger, Fnu Nipun, Norbert Perrimon, and Stephanie Mohr. 2020. “BioLitMine: Advanced Mining of Biomedical and Biological Literature About Human Genes and Genes from Major Model Organisms”. G3 (Bethesda). doi:10.1534/g3.120.401775
Yanhui Hu, Aram Comjean, Charles Roesel, Arunachalam Vinayagam, Ian Flockhart, Jonathan Zirin, Lizabeth Perkins, Norbert Perrimon, and Stephanie Mohr. 2016. “FlyRNAi.Org—the Database of the Drosophila RNAi Screening Center and Transgenic RNAi Project: 2017 Update”. Nucleic Acids Research
Yanhui Hu, Aram Comjean, Charles Roesel, Arunachalam Vinayagam, Ian Flockhart, Jonathan Zirin, Lizabeth Perkins, Norbert Perrimon, and Stephanie Mohr. 2016. “FlyRNAi.Org—the Database of the Drosophila RNAi Screening Center and Transgenic RNAi Project: 2017 Update”. Nucleic Acids Research
Chris Bakal, Rune Linding, Flora Llense, Elleard Heffern, Enrique Martin-Blanco, Tony Pawson, and Norbert Perrimon. 2008. “Phosphorylation Networks Regulating JNK Activity in Diverse Genetic Backgrounds.”. Science, 322, 5900, Pp. 453-6. doi:10.1126/science.1158739
Chris Bakal, Rune Linding, Flora Llense, Elleard Heffern, Enrique Martin-Blanco, Tony Pawson, and Norbert Perrimon. 2008. “Phosphorylation Networks Regulating JNK Activity in Diverse Genetic Backgrounds.”. Science, 322, 5900, Pp. 453-6. doi:10.1126/science.1158739
Mathias Beller, Carole Sztalryd, Noel Southall, Ming Bell, Herbert Jäckle, Douglas Auld, and Brian Oliver. 2008. “COPI Complex Is a Regulator of Lipid Homeostasis.”. PLoS Biol, 6, 11, Pp. e292. doi:10.1371/journal.pbio.0060292
Mathias Beller, Carole Sztalryd, Noel Southall, Ming Bell, Herbert Jäckle, Douglas Auld, and Brian Oliver. 2008. “COPI Complex Is a Regulator of Lipid Homeostasis.”. PLoS Biol, 6, 11, Pp. e292. doi:10.1371/journal.pbio.0060292
Lorna Kategaya, Binita Changkakoty, Travis Biechele, William Conrad, Ajamete Kaykas, Ramanuj DasGupta, and Randall Moon. 2009. “Bili Inhibits Wnt Beta-Catenin Signaling by Regulating the Recruitment of Axin to LRP6.”. PLoS One, 4, 7, Pp. e6129. doi:10.1371/journal.pone.0006129
Lorna Kategaya, Binita Changkakoty, Travis Biechele, William Conrad, Ajamete Kaykas, Ramanuj DasGupta, and Randall Moon. 2009. “Bili Inhibits Wnt Beta-Catenin Signaling by Regulating the Recruitment of Axin to LRP6.”. PLoS One, 4, 7, Pp. e6129. doi:10.1371/journal.pone.0006129
Ralph Neumüller and Norbert Perrimon. 2011. “Where Gene Discovery Turns into Systems Biology: Genome-Scale RNAi Screens in Drosophila.”. Wiley Interdiscip Rev Syst Biol Med, 3, 4, Pp. 471-8. doi:10.1002/wsbm.127
Ralph Neumüller and Norbert Perrimon. 2011. “Where Gene Discovery Turns into Systems Biology: Genome-Scale RNAi Screens in Drosophila.”. Wiley Interdiscip Rev Syst Biol Med, 3, 4, Pp. 471-8. doi:10.1002/wsbm.127
Adam Friedman, George Tucker, Rohit Singh, Dong Yan, Arunachalam Vinayagam, Yanhui Hu, Richard Binari, Pengyu Hong, Xiaoyun Sun, Maura Porto, Svetlana Pacifico, Thilakam Murali, Russell Finley, John Asara, Bonnie Berger, and Norbert Perrimon. 2011. “Proteomic and Functional Genomic Landscape of Receptor Tyrosine Kinase and Ras to Extracellular Signal-Regulated Kinase Signaling.”. Sci Signal, 4, 196, Pp. rs10. doi:10.1126/scisignal.2002029
Adam Friedman, George Tucker, Rohit Singh, Dong Yan, Arunachalam Vinayagam, Yanhui Hu, Richard Binari, Pengyu Hong, Xiaoyun Sun, Maura Porto, Svetlana Pacifico, Thilakam Murali, Russell Finley, John Asara, Bonnie Berger, and Norbert Perrimon. 2011. “Proteomic and Functional Genomic Landscape of Receptor Tyrosine Kinase and Ras to Extracellular Signal-Regulated Kinase Signaling.”. Sci Signal, 4, 196, Pp. rs10. doi:10.1126/scisignal.2002029
Mar Arias Garcia, Miguel Sanchez Alvarez, Heba Sailem, Vicky Bousgouni, Julia Sero, and Chris Bakal. 2012. “Differential RNAi Screening Provides Insights into the Rewiring of Signalling Networks During Oxidative Stress.”. Mol Biosyst, 8, 10, Pp. 2605-13. doi:10.1039/c2mb25092f
Mar Arias Garcia, Miguel Sanchez Alvarez, Heba Sailem, Vicky Bousgouni, Julia Sero, and Chris Bakal. 2012. “Differential RNAi Screening Provides Insights into the Rewiring of Signalling Networks During Oxidative Stress.”. Mol Biosyst, 8, 10, Pp. 2605-13. doi:10.1039/c2mb25092f
Arunachalam Vinayagam, Jonathan Zirin, Charles Roesel, Yanhui Hu, Bahar Yilmazel, Anastasia Samsonova, Ralph Neumüller, Stephanie Mohr, and Norbert Perrimon. 2014. “Integrating Protein-Protein Interaction Networks With Phenotypes Reveals Signs of Interactions.”. Nat Methods, 11, 1, Pp. 94-9. doi:10.1038/nmeth.2733
Arunachalam Vinayagam, Jonathan Zirin, Charles Roesel, Yanhui Hu, Bahar Yilmazel, Anastasia Samsonova, Ralph Neumüller, Stephanie Mohr, and Norbert Perrimon. 2014. “Integrating Protein-Protein Interaction Networks With Phenotypes Reveals Signs of Interactions.”. Nat Methods, 11, 1, Pp. 94-9. doi:10.1038/nmeth.2733