Yeast (S. cerevisiae)

Content tagged with Yeast (S. cerevisiae)

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New publications from the DRSC bioinformatics team

News
The DRSC bioinformatics team, led by Dr. Claire Yanhui Hu, has recently published two new papers. One reports development of BioLitMine, an advanced literature mining resource. The other provides an overview of our online resources, which can be grouped...

DRSC Bioinformatics launches iProteinDB and BioLitMine

News
We have two new online tools available: iProteinDB and BioLitMine. Both continue our series of resources aimed at integrating existing information in new ways to facilitate data mining and development of new hypotheses. In addition, iProteinDB includes a...

DIOPT 6.0 released -- with eggNOG and paralog searches added

News
DIOPT 6.0 went live this week. Newly added features include results from eggNOG, bringing the total number of alrogithms incorporated in our integrated search tool to 14. In addition, you can now search for paralogs. To do this, choose the same species...

Now Available: Our 2017 NAR database issue update

News
Read about the DRSC/TRiP Functional Genomics Resources online tools and more in our 2017 Nucleic Acids Research database issue update publication. Tables 1 & 2 in particular are meant to give you a quick look at what online tools we offer and how they fit...

"One vs. All" a new feature in our ortholog search tool

News
Our DIOPT ortholog search tool has been updated to include the option to search for orthologs of a gene in all other species included. So you can search with, for example, a fly gene, and see orthologs in human, mouse, rat, frog, worm, and yeast. Click on...

DRSC & TRiP at TAGC 2016

News
We have begun preparing for our participation at TAGC 2016 in Orlando, FL. We will be presenting a workshop on functional genomics for cross-species studies, as well as participating in the poster session. Want to talk with experts in cell or in vivo RNAi...

Bibliographic References tagged with Yeast (S. cerevisiae)

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Dashnamoorthy Ravi, Amy Wiles, Selvaraj Bhavani, Jianhua Ruan, Philip Leder, and Alexander Bishop. 2009. “A Network of Conserved Damage Survival Pathways Revealed by a Genomic RNAi Screen.”. PLoS Genet, 5, 6, Pp. e1000527. doi:10.1371/journal.pgen.1000527
Dashnamoorthy Ravi, Amy Wiles, Selvaraj Bhavani, Jianhua Ruan, Philip Leder, and Alexander Bishop. 2009. “A Network of Conserved Damage Survival Pathways Revealed by a Genomic RNAi Screen.”. PLoS Genet, 5, 6, Pp. e1000527. doi:10.1371/journal.pgen.1000527
Franz Wendler, Alison Gillingham, Rita Sinka, Cláudia Rosa-Ferreira, David Gordon, Xavier Franch-Marro, Andrew Peden, Jean-Paul Vincent, and Sean Munro. 2010. “A Genome-Wide RNA Interference Screen Identifies Two Novel Components of the Metazoan Secretory Pathway.”. EMBO J, 29, 2, Pp. 304-14. doi:10.1038/emboj.2009.350
Franz Wendler, Alison Gillingham, Rita Sinka, Cláudia Rosa-Ferreira, David Gordon, Xavier Franch-Marro, Andrew Peden, Jean-Paul Vincent, and Sean Munro. 2010. “A Genome-Wide RNA Interference Screen Identifies Two Novel Components of the Metazoan Secretory Pathway.”. EMBO J, 29, 2, Pp. 304-14. doi:10.1038/emboj.2009.350
Amy Wiles, Mark Doderer, Jianhua Ruan, Ting-Ting Gu, Dashnamoorthy Ravi, Barron Blackman, and Alexander Bishop. 2010. “Building and Analyzing Protein Interactome Networks by Cross-Species Comparisons.”. BMC Syst Biol, 4, Pp. 36. doi:10.1186/1752-0509-4-36
Amy Wiles, Mark Doderer, Jianhua Ruan, Ting-Ting Gu, Dashnamoorthy Ravi, Barron Blackman, and Alexander Bishop. 2010. “Building and Analyzing Protein Interactome Networks by Cross-Species Comparisons.”. BMC Syst Biol, 4, Pp. 36. doi:10.1186/1752-0509-4-36
Yanhui Hu, Ian Flockhart, Arunachalam Vinayagam, Clemens Bergwitz, Bonnie Berger, Norbert Perrimon, and Stephanie Mohr. 2011. “An Integrative Approach to Ortholog Prediction for Disease-Focused and Other Functional Studies.”. BMC Bioinformatics, 12, Pp. 357. doi:10.1186/1471-2105-12-357
Yanhui Hu, Ian Flockhart, Arunachalam Vinayagam, Clemens Bergwitz, Bonnie Berger, Norbert Perrimon, and Stephanie Mohr. 2011. “An Integrative Approach to Ortholog Prediction for Disease-Focused and Other Functional Studies.”. BMC Bioinformatics, 12, Pp. 357. doi:10.1186/1471-2105-12-357
Arunachalam Vinayagam, Yanhui Hu, Meghana Kulkarni, Charles Roesel, Richelle Sopko, Stephanie Mohr, and Norbert Perrimon. 2013. “Protein Complex-Based Analysis Framework for High-Throughput Data Sets.”. Sci Signal, 6, 264, Pp. rs5. doi:10.1126/scisignal.2003629
Arunachalam Vinayagam, Yanhui Hu, Meghana Kulkarni, Charles Roesel, Richelle Sopko, Stephanie Mohr, and Norbert Perrimon. 2013. “Protein Complex-Based Analysis Framework for High-Throughput Data Sets.”. Sci Signal, 6, 264, Pp. rs5. doi:10.1126/scisignal.2003629
Ralph Neumüller, Thomas Gross, Anastasia Samsonova, Arunachalam Vinayagam, Michael Buckner, Karen Founk, Yanhui Hu, Sara Sharifpoor, Adam Rosebrock, Brenda Andrews, Fred Winston, and Norbert Perrimon. 2013. “Conserved Regulators of Nucleolar Size Revealed by Global Phenotypic Analyses.”. Sci Signal, 6, 289, Pp. ra70. doi:10.1126/scisignal.2004145
Ralph Neumüller, Thomas Gross, Anastasia Samsonova, Arunachalam Vinayagam, Michael Buckner, Karen Founk, Yanhui Hu, Sara Sharifpoor, Adam Rosebrock, Brenda Andrews, Fred Winston, and Norbert Perrimon. 2013. “Conserved Regulators of Nucleolar Size Revealed by Global Phenotypic Analyses.”. Sci Signal, 6, 289, Pp. ra70. doi:10.1126/scisignal.2004145