Drosophila (fly)
Content tagged with Drosophila (fly)
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News
Eui Jae Sung, Stephen Shears, and colleagues have published a research report that includes a screen of dsRNAs from the DRSC reagent collection using S2 cells. We shipped dsRNA reagents to the lab for a screen at their home institution, in addition to...
Variable Dose Analysis: a new DRSC-supported cell screen approach that leverages existing reagents to perform robust screens
News
We are excited to report the publication of a paper from Benjamin Housden and colleagues describing development and use of the Variable Dose Analysis (VDA) approach. Ben developed a way to use existing TRiP shRNA plasmids originally developed for fly...
Tutorial on DIOPT ortholog search tool scores, ranks and 'best' matches
News
In response to a request placed using our bug report form, we have put together a YouTube video demonstration that explains the scores, ranks, and 'best' matches that appear as part of the results tables at the DRSC Integrative Ortholog Precition Tool or...
TRiP-CRISPR stocks now available at BDSC
News
TRiP-CRISPR stocks are now being distributed via the Bloomington Drosophila Stock Center (BDSC). You can find the list of guide RNA stocks for gene knockout or overexpression through the guideRNAs link on the BDSC homepage. The TRiP-CRISPR Toolbox of Gal4...
Nucleolar image-based screen dataset viewable online with OMERO
News
The DRSC has worked with the HMS Image Data Management Core to make a ~3 TB image fluorescence confocal screen image dataset from the screen reported in Neumuller et al. available online. And not just available--with several interaction options! At the...
Plasmid clones and data available from the FlyBi project
News
The DRSC is collaborating with the Berkeley Drosophila Genome Project and the DFCI Center for Cancer Systems Biology on a large-scale Drosophila binary protein interaction project, the FlyBi project. We have deposited Drosophila ORFs in Gateway vectors at...
The TRiP is now taking nominations for CRISPR stocks
News
The TRiP is excited to announce our new TRiP-CRISPR transgenic fly libraries for gene knockout and overexpression. Visit the sgRNA tracking site to download and search existing TRiP-CRISPR fly stocks by gene or stock ID to obtain information on sgRNA...
Francois Payre's plenary talk at ADRC 2017 features results from DRSC cell-based screen
News
Those of us lucky enough to be at the Annual Drosophila Research Conference this morning saw a great talk by Francois Payre about regulation of Shavenbaby by small ORFs. A genome-wide cell-based screen done at the DRSC by Emilie Benrabah identified the...
New automated imaging at the DRSC
News
The DRSC/TRiP-FGR is pleased to announce that we recently updated our high-throughput, high-content imaging system. Through funds from NIH, HHMI, and the Harvard Medical School Tools & Technology program, we were able to get a GE IN Cell 6000 automated...
New stocks added to the TRiP in vivo RNAi library
News
The TRiP has updated and curated our list of in vivo RNAi reagents for gene knockdown in fruitflies. To date, we have produced over 13,000 stocks for the benefit of the scientific community. Visit the in vivo RNAi fly stocks and vectors page to download...
Bibliographic References tagged with Drosophila (fly)
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Yanhui Hu, Aram Comjean, Jonathan Rodiger, Weihang Chen, Ah-Ram Kim, Mujeeb Qadiri, Chenxi Gao, Jonathan Zirin, Stephanie E Mohr, and Norbert Perrimon. 2024. “FlyRNAi.Org 2025 Update-Expanded Resources for New Technologies and Species.”. Nucleic Acids Research. doi:10.1093/nar/gkae917
Yanhui Hu, Aram Comjean, Jonathan Rodiger, Weihang Chen, Ah-Ram Kim, Mujeeb Qadiri, Chenxi Gao, Jonathan Zirin, Stephanie E Mohr, and Norbert Perrimon. 2024. “FlyRNAi.Org 2025 Update-Expanded Resources for New Technologies and Species.”. Nucleic Acids Research. doi:10.1093/nar/gkae917
Raghuvir Viswanatha, Samuel Entwisle, Claire Hu, Kelly Reap, Matthew Butnaru, Stephanie E Mohr, and Norbert Perrimon. 2024. “Higher Resolution Pooled Genome-Wide CRISPR Knockout Screening in Drosophila Cells Using Integration and Anti-CRISPR (IntAC).”. BioRxiv : The Preprint Server for Biology. doi:10.1101/2024.09.19.613976
Raghuvir Viswanatha, Samuel Entwisle, Claire Hu, Kelly Reap, Matthew Butnaru, Stephanie E Mohr, and Norbert Perrimon. 2024. “Higher Resolution Pooled Genome-Wide CRISPR Knockout Screening in Drosophila Cells Using Integration and Anti-CRISPR (IntAC).”. BioRxiv : The Preprint Server for Biology. doi:10.1101/2024.09.19.613976
Ah-Ram Kim, Yanhui Hu, Aram Comjean, Jonathan Rodiger, Stephanie Mohr, and Norbert Perrimon. 2024. “Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer”. BioRxiv, Pp. 2024.02.19.580970
Ah-Ram Kim, Yanhui Hu, Aram Comjean, Jonathan Rodiger, Stephanie Mohr, and Norbert Perrimon. 2024. “Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer”. BioRxiv, Pp. 2024.02.19.580970
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth Wan, Joel Bader, Dawit Balcha, Wenting Bian, Benjamin Booth, Atina Coté, Steffi de Rouck, Alice Desbuleux, Kah Goh, Dae-Kyum Kim, Jennifer Knapp, Wen Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael Calderwood, David Hill, Susan Celniker, Marc Vidal, Norbert Perrimon, and Stephanie E. Mohr. 2023. “Next-Generation Large-Scale Binary Protein Interaction Network for Drosophila Melanogaster”, 14, 1, Pp. 2162
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth Wan, Joel Bader, Dawit Balcha, Wenting Bian, Benjamin Booth, Atina Coté, Steffi de Rouck, Alice Desbuleux, Kah Goh, Dae-Kyum Kim, Jennifer Knapp, Wen Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael Calderwood, David Hill, Susan Celniker, Marc Vidal, Norbert Perrimon, and Stephanie E. Mohr. 2023. “Next-Generation Large-Scale Binary Protein Interaction Network for Drosophila Melanogaster”, 14, 1, Pp. 2162
Nikki Coleman-Gosser, Yanhui Hu, Shiva Raghuvanshi, Shane Stitzinger, Weihang Chen, Arthur Luhur, Daniel Mariyappa, Molly Josifov, Andrew Zelhof, Stephanie Mohr, Norbert Perrimon, and Amanda Simcox. 2023. “Continuous Muscle, Glial, Epithelial, Neuronal, and Hemocyte Cell Lines for Research”. Elife, 12. doi:10.7554/eLife.85814
Nikki Coleman-Gosser, Yanhui Hu, Shiva Raghuvanshi, Shane Stitzinger, Weihang Chen, Arthur Luhur, Daniel Mariyappa, Molly Josifov, Andrew Zelhof, Stephanie Mohr, Norbert Perrimon, and Amanda Simcox. 2023. “Continuous Muscle, Glial, Epithelial, Neuronal, and Hemocyte Cell Lines for Research”. Elife, 12. doi:10.7554/eLife.85814
Baolong Xia, Raghuvir Viswanatha, Yanhui Hu, Stephanie Mohr, and Norbert Perrimon. 2023. “Pooled Genome-Wide CRISPR Activation Screening for Rapamycin Resistance Genes in Cells”. Elife, 12. doi:10.7554/eLife.85542
Baolong Xia, Raghuvir Viswanatha, Yanhui Hu, Stephanie Mohr, and Norbert Perrimon. 2023. “Pooled Genome-Wide CRISPR Activation Screening for Rapamycin Resistance Genes in Cells”. Elife, 12. doi:10.7554/eLife.85542
Shue Chen, Leah Rosin, Gianluca Pegoraro, Nellie Moshkovich, Patrick Murphy, Guoyun Yu, and Elissa Lei. 2022. “NURF301 Contributes to Gypsy Chromatin Insulator-Mediated Nuclear Organization”. Nucleic Acids Res, 50, 14, Pp. 7906-24. doi:10.1093/nar/gkac600
Shue Chen, Leah Rosin, Gianluca Pegoraro, Nellie Moshkovich, Patrick Murphy, Guoyun Yu, and Elissa Lei. 2022. “NURF301 Contributes to Gypsy Chromatin Insulator-Mediated Nuclear Organization”. Nucleic Acids Res, 50, 14, Pp. 7906-24. doi:10.1093/nar/gkac600
Ying Xu, Raghuvir Viswanatha, Oleg Sitsel, Daniel Roderer, Haifang Zhao, Christopher Ashwood, Cecilia Voelcker, Songhai Tian, Stefan Raunser, Norbert Perrimon, and Min Dong. 2022. “CRISPR Screens in Drosophila Cells Identify Vsg As a Tc Toxin Receptor”. Nature, 610, 7931, Pp. 349-55. doi:10.1038/s41586-022-05250-7
Ying Xu, Raghuvir Viswanatha, Oleg Sitsel, Daniel Roderer, Haifang Zhao, Christopher Ashwood, Cecilia Voelcker, Songhai Tian, Stefan Raunser, Norbert Perrimon, and Min Dong. 2022. “CRISPR Screens in Drosophila Cells Identify Vsg As a Tc Toxin Receptor”. Nature, 610, 7931, Pp. 349-55. doi:10.1038/s41586-022-05250-7
Hans Dalton, Raghuvir Viswanatha, Roderick Brathwaite, Jae Sophia Zuno, Alexys Berman, Rebekah Rushforth, Stephanie Mohr, Norbert Perrimon, and Clement Chow. 2022. “A Genome-Wide CRISPR Screen Identifies DPM1 As a Modifier of DPAGT1 Deficiency and ER Stress”. PLoS Genet, 18, 9, Pp. e1010430. doi:10.1371/journal.pgen.1010430
Hans Dalton, Raghuvir Viswanatha, Roderick Brathwaite, Jae Sophia Zuno, Alexys Berman, Rebekah Rushforth, Stephanie Mohr, Norbert Perrimon, and Clement Chow. 2022. “A Genome-Wide CRISPR Screen Identifies DPM1 As a Modifier of DPAGT1 Deficiency and ER Stress”. PLoS Genet, 18, 9, Pp. e1010430. doi:10.1371/journal.pgen.1010430
Jiunn Song, Arda Mizrak, Chia-Wei Lee, Marcelo Cicconet, Zon Weng Lai, Wei-Chun Tang, Chieh-Han Lu, Stephanie E. Mohr, Robert V. Farese, and Tobias C. Walther. 2022. “Identification of Two Pathways Mediating Protein Targeting from ER to Lipid Droplets”. Nature Cell Biol
Jiunn Song, Arda Mizrak, Chia-Wei Lee, Marcelo Cicconet, Zon Weng Lai, Wei-Chun Tang, Chieh-Han Lu, Stephanie E. Mohr, Robert V. Farese, and Tobias C. Walther. 2022. “Identification of Two Pathways Mediating Protein Targeting from ER to Lipid Droplets”. Nature Cell Biol