High-throughput data analysis

Content tagged with High-throughput data analysis

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DRSC-BTRR at the GSA Molecular Parasitology Meeting XXXI

Event
The Drosophila Research & Screening Center-Biomedical Technology Research Resource (DRSC-BTRR) will be represented at the GSA's Molecular Parasitology Meeting XXXI (a virtual event). Look for a presentation by Viswanatha et al. on our work establishing...

DRSC at 17th annual World Preclinical Congress

Event
The DRSC/TRiP-FGR Director, Stephanie Mohr, will be co-teaching a short course on cell-based screening and single-cell studies, as well as co-moderating a discussion session, at the 17th annual World Preclinical Congress.

DRSC & TRiP Workshop at ADRC

Event
The DRSC & TRiP will be hosting a workshop at the Annual Drosophila Research Conference in Philadelphia, PA. The workshop is scheduled for Friday, April 13th from 1:45 to 3:45 PM. Come hear from DRSC & TRiP leaders Norbert Perrimon, Jonathan Zirin...

Now Available: Our 2017 NAR database issue update

News
Read about the DRSC/TRiP Functional Genomics Resources online tools and more in our 2017 Nucleic Acids Research database issue update publication. Tables 1 & 2 in particular are meant to give you a quick look at what online tools we offer and how they fit...

DRSC & TRiP at ADRC 2017

Event
The DRSC & TRiP will be at the Annual Drosophila Research Conference (aka 'the fly meeting') in San Diego, CA, in March/April of 2017. Please feel free to contact us if you'd like to set up a meeting to discuss a screen project or other research need we...

Bibliographic References tagged with High-throughput data analysis

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Yanhui Hu, Aram Comjean, Jonathan Rodiger, Weihang Chen, Ah-Ram Kim, Mujeeb Qadiri, Chenxi Gao, Jonathan Zirin, Stephanie E Mohr, and Norbert Perrimon. 2024. “FlyRNAi.Org 2025 Update-Expanded Resources for New Technologies and Species.”. Nucleic Acids Research. doi:10.1093/nar/gkae917
Yanhui Hu, Aram Comjean, Jonathan Rodiger, Weihang Chen, Ah-Ram Kim, Mujeeb Qadiri, Chenxi Gao, Jonathan Zirin, Stephanie E Mohr, and Norbert Perrimon. 2024. “FlyRNAi.Org 2025 Update-Expanded Resources for New Technologies and Species.”. Nucleic Acids Research. doi:10.1093/nar/gkae917
Raghuvir Viswanatha, Samuel Entwisle, Claire Hu, Kelly Reap, Matthew Butnaru, Stephanie E Mohr, and Norbert Perrimon. 2024. “Higher Resolution Pooled Genome-Wide CRISPR Knockout Screening in Drosophila Cells Using Integration and Anti-CRISPR (IntAC).”. BioRxiv : The Preprint Server for Biology. doi:10.1101/2024.09.19.613976
Raghuvir Viswanatha, Samuel Entwisle, Claire Hu, Kelly Reap, Matthew Butnaru, Stephanie E Mohr, and Norbert Perrimon. 2024. “Higher Resolution Pooled Genome-Wide CRISPR Knockout Screening in Drosophila Cells Using Integration and Anti-CRISPR (IntAC).”. BioRxiv : The Preprint Server for Biology. doi:10.1101/2024.09.19.613976
Ah-Ram Kim, Yanhui Hu, Aram Comjean, Jonathan Rodiger, Stephanie Mohr, and Norbert Perrimon. 2024. “Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer”. BioRxiv, Pp. 2024.02.19.580970
Ah-Ram Kim, Yanhui Hu, Aram Comjean, Jonathan Rodiger, Stephanie Mohr, and Norbert Perrimon. 2024. “Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer”. BioRxiv, Pp. 2024.02.19.580970
Hans M. Dalton, Raghuvir Viswanatha, Ricky Brathwaite Jr., Jae Sophia Zuno, Stephanie Mohr, Norbert Perrimon, and Clement Y. Chow. 2021. “A Genome-Wide CRISPR Screen Identifies the Glycosylation Enzyme DPM1 As a Modifier of DPAGT1 Deficiency and ER Stress”. BioRxiv
Hans M. Dalton, Raghuvir Viswanatha, Ricky Brathwaite Jr., Jae Sophia Zuno, Stephanie Mohr, Norbert Perrimon, and Clement Y. Chow. 2021. “A Genome-Wide CRISPR Screen Identifies the Glycosylation Enzyme DPM1 As a Modifier of DPAGT1 Deficiency and ER Stress”. BioRxiv
Yanhui Hu, Aram Comjean, Jonathan Rodiger, Yifang Liu, Yue Gao, Verena Chung, Jonathan Zirin, Norbert Perrimon, and Stephanie Mohr. 2020. “FlyRNAi.Org-the Database of the Drosophila RNAi Screening Center and Transgenic RNAi Project: 2021 Update”. Nucleic Acids Res. doi:10.1093/nar/gkaa936
Yanhui Hu, Aram Comjean, Jonathan Rodiger, Yifang Liu, Yue Gao, Verena Chung, Jonathan Zirin, Norbert Perrimon, and Stephanie Mohr. 2020. “FlyRNAi.Org-the Database of the Drosophila RNAi Screening Center and Transgenic RNAi Project: 2021 Update”. Nucleic Acids Res. doi:10.1093/nar/gkaa936
R. Hung, Y. Hu, R. Kirchner, Fengge Li, C. Xu, A. Comjean, S.G. Tattikota, W.R. Song, S. Ho Sui, and N. Perrimon. 2018. “Data Portal for ‘A Cell Atlas of the Adult Drosophila Midgut’ (BioRxiv)”
R. Hung, Y. Hu, R. Kirchner, Fengge Li, C. Xu, A. Comjean, S.G. Tattikota, W.R. Song, S. Ho Sui, and N. Perrimon. 2018. “Data Portal for ‘A Cell Atlas of the Adult Drosophila Midgut’ (BioRxiv)”
AJ Copeland, Comjean, Perrimon, and SE Mohr. 2017. “Online View of High-Content Image Data Generated in the Genome-Wide Screen Described in Neumüller et Al. 2013, ‘Conserved Regulators of Nucleolar Size Revealed by Global Phenotypic Analyses,’ Made Possible Using OMERO at HMS”
AJ Copeland, Comjean, Perrimon, and SE Mohr. 2017. “Online View of High-Content Image Data Generated in the Genome-Wide Screen Described in Neumüller et Al. 2013, ‘Conserved Regulators of Nucleolar Size Revealed by Global Phenotypic Analyses,’ Made Possible Using OMERO at HMS”
Zanet, Benrabah, Li, Pélissier-Monier, Chanut-Delalande, Ronsin, Bellen, Payre, and Plaza. 2015. “Pri SORF Peptides Induce Selective Proteasome-Mediated Protein Processing”. Science, 349, 6254, Pp. 1356-8. doi:10.1126/science.aac5677
Zanet, Benrabah, Li, Pélissier-Monier, Chanut-Delalande, Ronsin, Bellen, Payre, and Plaza. 2015. “Pri SORF Peptides Induce Selective Proteasome-Mediated Protein Processing”. Science, 349, 6254, Pp. 1356-8. doi:10.1126/science.aac5677
2015. “MitoMax Data Set and Annotations (data Portal for Chen et Al. 2015 ‘Proteomic Mapping in Live Drosophila Tissues Using an Engineeredascorbate Peroxidase,’ Proc Natl Acad Sci U S A. Vol. 112(39):12093-8. PMID: 26362788; PMCID: PMC4593093.)”
2015. “MitoMax Data Set and Annotations (data Portal for Chen et Al. 2015 ‘Proteomic Mapping in Live Drosophila Tissues Using an Engineeredascorbate Peroxidase,’ Proc Natl Acad Sci U S A. Vol. 112(39):12093-8. PMID: 26362788; PMCID: PMC4593093.)”
Arunachalam Vinayagam, Meghana Kulkarni, Richelle Sopko, Xiaoyun Sun, Yanhui Hu, Ankita Nand, Christians Villalta, Ahmadali Moghimi, Xuemei Yang, Stephanie Mohr, Pengyu Hong, John Asara, and Norbert Perrimon. 2016. “An Integrative Analysis of the InR PI3K Akt Network Identifies the Dynamic Response to Insulin Signaling”. Cell Reports, 16, 11, Pp. 3062-74
Arunachalam Vinayagam, Meghana Kulkarni, Richelle Sopko, Xiaoyun Sun, Yanhui Hu, Ankita Nand, Christians Villalta, Ahmadali Moghimi, Xuemei Yang, Stephanie Mohr, Pengyu Hong, John Asara, and Norbert Perrimon. 2016. “An Integrative Analysis of the InR PI3K Akt Network Identifies the Dynamic Response to Insulin Signaling”. Cell Reports, 16, 11, Pp. 3062-74