Bioinformatics
Bibliographic References tagged with Bioinformatics
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Yanhui Hu, Aram Comjean, Jonathan Rodiger, Weihang Chen, Ah-Ram Kim, Mujeeb Qadiri, Chenxi Gao, Jonathan Zirin, Stephanie E Mohr, and Norbert Perrimon. 2024. “FlyRNAi.Org 2025 Update-Expanded Resources for New Technologies and Species.”. Nucleic Acids Research. doi:10.1093/nar/gkae917
Yanhui Hu, Aram Comjean, Jonathan Rodiger, Weihang Chen, Ah-Ram Kim, Mujeeb Qadiri, Chenxi Gao, Jonathan Zirin, Stephanie E Mohr, and Norbert Perrimon. 2024. “FlyRNAi.Org 2025 Update-Expanded Resources for New Technologies and Species.”. Nucleic Acids Research. doi:10.1093/nar/gkae917
Ah-Ram Kim, Yanhui Hu, Aram Comjean, Jonathan Rodiger, Stephanie Mohr, and Norbert Perrimon. 2024. “Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer”. BioRxiv, Pp. 2024.02.19.580970
Ah-Ram Kim, Yanhui Hu, Aram Comjean, Jonathan Rodiger, Stephanie Mohr, and Norbert Perrimon. 2024. “Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer”. BioRxiv, Pp. 2024.02.19.580970
Ashley Mae Conard, Nathaniel Goodman, Yanhui Hu, Norbert Perrimon, Ritambhara Singh, Charles Lawrence, and Erica Larschan. 2021. “TIMEOR: A Web-Based Tool to Uncover Temporal Regulatory Mechanisms from Multi-Omics Data”. Nucleic Acids Res, 49, W1, Pp. W641-W653. doi:10.1093/nar/gkab384
Ashley Mae Conard, Nathaniel Goodman, Yanhui Hu, Norbert Perrimon, Ritambhara Singh, Charles Lawrence, and Erica Larschan. 2021. “TIMEOR: A Web-Based Tool to Uncover Temporal Regulatory Mechanisms from Multi-Omics Data”. Nucleic Acids Res, 49, W1, Pp. W641-W653. doi:10.1093/nar/gkab384
Raghuvir Viswanatha, Enzo Mameli, Jonathan Rodiger, Pierre Merckaert, Fabiana Feitosa-Suntheimer, Tonya Colpitts, Stephanie Mohr, Yanhui Hu, and Norbert Perrimon. 2021. “Bioinformatic and Cell-Based Tools for Pooled CRISPR Knockout Screening in Mosquitos”. Nat Commun, 12, 1, Pp. 6825. doi:10.1038/s41467-021-27129-3
Raghuvir Viswanatha, Enzo Mameli, Jonathan Rodiger, Pierre Merckaert, Fabiana Feitosa-Suntheimer, Tonya Colpitts, Stephanie Mohr, Yanhui Hu, and Norbert Perrimon. 2021. “Bioinformatic and Cell-Based Tools for Pooled CRISPR Knockout Screening in Mosquitos”. Nat Commun, 12, 1, Pp. 6825. doi:10.1038/s41467-021-27129-3
Yanhui Hu, Sudhir Gopal Tattikota, Yifang Liu, Aram Comjean, Yue Gao, Corey Forman, Grace Kim, Jonathan Rodiger, Irene Papatheodorou, Gilberto Dos Santos, Stephanie Mohr, and Norbert Perrimon. 2021. “DRscDB: A Single-Cell RNA-Seq Resource for Data Mining and Data Comparison across Species”. Comput Struct Biotechnol J, 19, Pp. 2018-26. doi:10.1016/j.csbj.2021.04.021
Yanhui Hu, Sudhir Gopal Tattikota, Yifang Liu, Aram Comjean, Yue Gao, Corey Forman, Grace Kim, Jonathan Rodiger, Irene Papatheodorou, Gilberto Dos Santos, Stephanie Mohr, and Norbert Perrimon. 2021. “DRscDB: A Single-Cell RNA-Seq Resource for Data Mining and Data Comparison across Species”. Comput Struct Biotechnol J, 19, Pp. 2018-26. doi:10.1016/j.csbj.2021.04.021
Raghuvir Viswanatha, Enzo Mameli, Jonathan Rodiger, Pierre Merckaert, Fabiana Feitosa-Suntheimer, Tonya M. Colpitts, Stephanie E. Mohr, Yanhui Hu, and Norbert Perrimon. 2021. “Bioinformatic and Cell-Based Tools for Pooled CRISPR Knockout Screening in Mosquitos [NOTE: A Modified Final Version Was Published in Nat Comm and Is Now Available.]”. BioRxiv. doi:10.1101/2021.03.29.437496
Raghuvir Viswanatha, Enzo Mameli, Jonathan Rodiger, Pierre Merckaert, Fabiana Feitosa-Suntheimer, Tonya M. Colpitts, Stephanie E. Mohr, Yanhui Hu, and Norbert Perrimon. 2021. “Bioinformatic and Cell-Based Tools for Pooled CRISPR Knockout Screening in Mosquitos [NOTE: A Modified Final Version Was Published in Nat Comm and Is Now Available.]”. BioRxiv. doi:10.1101/2021.03.29.437496
Xuechun Feng, Víctor López Del Amo, Enzo Mameli, Megan Lee, Alena Bishop, Norbert Perrimon, and Valentino Gantz. 2021. “Optimized CRISPR Tools and Site-Directed Transgenesis towards Gene Drive Development in Culex Quinquefasciatus Mosquitoes”. Nat Commun, 12, 1, Pp. 2960. doi:10.1038/s41467-021-23239-0
Xuechun Feng, Víctor López Del Amo, Enzo Mameli, Megan Lee, Alena Bishop, Norbert Perrimon, and Valentino Gantz. 2021. “Optimized CRISPR Tools and Site-Directed Transgenesis towards Gene Drive Development in Culex Quinquefasciatus Mosquitoes”. Nat Commun, 12, 1, Pp. 2960. doi:10.1038/s41467-021-23239-0
A.M. Conard, N. Goodman, Hu Y, N. Perrimon, R. Singh, C. Lawrence, and E. Larschan. 2020. “TIMEOR: A Web-Based Tool to Uncover Temporal Regulatory Mechanisms from Multi-Omics Data [NOTE: A Modified Final Version Was Published in NAR and Is Now Available]”. BioRxiv
A.M. Conard, N. Goodman, Hu Y, N. Perrimon, R. Singh, C. Lawrence, and E. Larschan. 2020. “TIMEOR: A Web-Based Tool to Uncover Temporal Regulatory Mechanisms from Multi-Omics Data [NOTE: A Modified Final Version Was Published in NAR and Is Now Available]”. BioRxiv
Yanhui Hu, Aram Comjean, Jonathan Rodiger, Yifang Liu, Yue Gao, Verena Chung, Jonathan Zirin, Norbert Perrimon, and Stephanie Mohr. 2020. “FlyRNAi.Org-the Database of the Drosophila RNAi Screening Center and Transgenic RNAi Project: 2021 Update”. Nucleic Acids Res. doi:10.1093/nar/gkaa936
Yanhui Hu, Aram Comjean, Jonathan Rodiger, Yifang Liu, Yue Gao, Verena Chung, Jonathan Zirin, Norbert Perrimon, and Stephanie Mohr. 2020. “FlyRNAi.Org-the Database of the Drosophila RNAi Screening Center and Transgenic RNAi Project: 2021 Update”. Nucleic Acids Res. doi:10.1093/nar/gkaa936
Yanhui Hu, Verena Chung, Aram Comjean, Jonathan Rodiger, Fnu Nipun, Norbert Perrimon, and Stephanie Mohr. 2020. “BioLitMine: Advanced Mining of Biomedical and Biological Literature About Human Genes and Genes from Major Model Organisms”. G3 (Bethesda). doi:10.1534/g3.120.401775
Yanhui Hu, Verena Chung, Aram Comjean, Jonathan Rodiger, Fnu Nipun, Norbert Perrimon, and Stephanie Mohr. 2020. “BioLitMine: Advanced Mining of Biomedical and Biological Literature About Human Genes and Genes from Major Model Organisms”. G3 (Bethesda). doi:10.1534/g3.120.401775