#  Online Tools and Databases 

 



 **This page has been replaced with a** [grid-format overview page](/tools)**.  
We welcome feedback.** [Contact us](https://hms.az1.qualtrics.com/jfe/form/SV_cApK7Mvnw54HeyV) **or reply at** [Twitter](https://twitter.com/DRSC_TRiP/status/1117870169450094593)**.**

 **Quick direct links:**  
[iProteinDB - post translational modification tool](https://www.flyrnai.org/tools/iproteindb/web/)  
[DIOPT ortholog search](https://www.flyrnai.org/diopt)  
[Gene Lookup data & reagent search](https://www.flyrnai.org/cgi-bin/DRSC_gene_lookup.pl)  
[UP-TORR RNAi reagent search](https://www.flyrnai.org/up-torr/)  
[TRiP RNAi fly stock batch query](https://www.flyrnai.org/cgi-bin/TRiP_batch_query.pl)  
[RSVP in vivo fly RNAi data](https://www.flyrnai.org/cgi-bin/RSVP_search.pl)  
[TRiP sgRNA fly stock nomination](https://www.flyrnai.org/tools/grna_tracker/web/)  
[Find CRISPRs sgRNA designs](https://www.flyrnai.org/crispr/)  
[Gene2Function (G2F)](http://www.gene2function.org/search/)  
[Molecular Interaction Search Tool (MIST)](https://fgrtools.hms.harvard.edu/MIST/index.jsp)  
[Search and Nominate genes for TRiP-CRISPR fly stocks](https://www.flyrnai.org/tools/grna_tracker/web/)  
[Nominate genes for CRIMIC production](https://www.flyrnai.org/tools/crimic/web/)

Sort    **find genes>** 

  **find reagents>** 

  **analyze data>** 

  **mine & visualize data** 

   #####  [DIOPT](https://www.flyrnai.org/diopt), [DIOPT-DIST](https://www.flyrnai.org/diopt-dist)  
[GLAD](https://www.flyrnai.org/tools/glad/web/)  
[DGET](https://www.flyrnai.org/tools/dget/web/)  
[G2F](http://www.gene2function.org/search/), [MARRVEL](http://marrvel.org/) 

 

 #####  [UP-TORR](https://www.flyrnai.org/up-torr/), [RSVP](https://www.flyrnai.org/cgi-bin/RSVP_search.pl)  
[FindCRISPR](https://www.flyrnai.org/crispr/), [TRiP sgRNA tracking](https://www.flyrnai.org/tools/grna_tracker/web/)  
[FlyPrimerBank](https://www.flyrnai.org/flyprimerbank)  
[G2F (ORFs)](http://www.gene2function.org/search/) 

 

 #####  [HRMA](https://www.flyrnai.org/hrma)  
[COMPLEAT](https://www.flyrnai.org/compleat/) 

 

 #####  [SignedPPI](https://www.flyrnai.org/SignedPPI/), [DirectedPPI,](https://www.flyrnai.org/DirectedPPI/) [InsulinNet](https://fgrtools.hms.harvard.edu/InsulinNetwork/), [MIST](https://fgrtools.hms.harvard.edu/MIST/index.jsp)  
[RSVP](https://www.flyrnai.org/cgi-bin/RSVP_search.pl)  
[DGET](https://www.flyrnai.org/tools/dget/web)  
[G2F](http://www.gene2function.org/search/), [MARRVEL](http://marrvel.org/)  
[Nucleolus screen images](https://www.flyrnai.org/tools/drsc_images/web/), [ScreenSummary](https://www.flyrnai.org/screensummary) 

 

 





 

Sort    If you want to ...   We recommend ...       Find orthologs (fly, vertebrates, worm, yeast) 

  [DIOPT](https://www.flyrnai.org/diopt) [[info](/diopt)]  
[G2F](http://www.gene2function.org/search/) [[info](http://www.gene2function.org/search/help)] 

    Find disease-related human orthologs   
(start with a gene(s) or disease term, or variant) 

  [DIOPT-DIST](https://www.flyrnai.org/diopt-dist) [[info](/diopt-dist)]  
[G2F](http://www.gene2function.org/search/) [[info](http://www.gene2function.org/search/help)]  
[MARRVEL](http://marrvel.org/) [[info](/marrvel)] 

    Find RNAi fly stocks (TRiP, VDRC, NIG-Japan)  
-or- find cell-based RNAi reagents (DKFZ, DRSC) 

  [UP-TORR](https://www.flyrnai.org/up-torr/) [[info](/up-torr)] 

    Do a batch query of TRiP RNAi fly stocks 

  [TRiP Stock Lookup](https://www.flyrnai.org/cgi-bin/TRiP_batch_query.pl) [[info](/trip-fly-stock-batch-query)] 

    Find, nominate, or track TRiP sgRNA stocks for CRISPR applications 

  [sgRNA Tracking](https://www.flyrnai.org/tools/grna_tracker/web/) 

    Check if an RNAi fly stock has a reported phenotype 

  [RSVP](https://www.flyrnai.org/cgi-bin/RSVP_search.pl) [[info](/rsvp)] 

    Mine public fly cell RNAi screen data (DRSC) 

  [GeneLookup](https://www.flyrnai.org/cgi-bin/DRSC_gene_lookup.pl) [[info](/gene-lookup)] 

    Mine public fly in vivo and cell RNA-seq data (modENCODE +) 

  [DGET](https://www.flyrnai.org/tools/dget/web/) [[info](/dget)] 

    Find qPCR primer designs for a fly gene(s) 

  [FlyPrimerBank](https://www.flyrnai.org/flyprimerbank) [[info](/flyprimerbank)] 

    Find short guide RNA (sgRNAs) for CRISPR applications in flies 

  [Find CRISPRs](https://www.flyrnai.org/crispr/) [[info](/find-crisprs)] 

    Evaluate sgRNAs for predicted efficiency in flies 

  [Evaluate CRISPRs](https://www.flyrnai.org/evaluateCrispr/) [[info](/crispr-efficiency)] 

    Use genomic qPCR data in a high resolution melt analysis 

  [HRMA](https://www.flyrnai.org/hrma) [[info](/hrma)] 

    Design dsRNAs or shRNAs for fly RNAi 

  [SnapDragon](https://www.flyrnai.org/cgi-bin/RNAi_find_primers.pl) [[info](/snapdragon)] 

    View genes by list (e.g. shared pathway or domain) 

  [GLAD](https://www.flyrnai.org/tools/glad/web/) [[info](/glad)] 

    Look for enrichment of protein complexes in a large dataset 

  [COMPLEAT](https://www.flyrnai.org/compleat/) [[info](/compleat)] 

    View, build, or navigate signed or directed protein networks 

  [SignedPPI](https://www.flyrnai.org/SignedPPI/) \[[info](/signedppi)\]  
[Directed PPI](https://www.flyrnai.org/DirectedPPI/) \[[info](https://www.flyrnai.org/DirectedPPI/Help.jsp)\]  
[MIST](http://fgrtools.hms.harvard.edu/MIST/index.jsp) \[[info](http://fgrtools.hms.harvard.edu/MIST/help.jsp)\]

 

    Get quick overview of past DRSC fly cell RNAi screens with links to datasets 

  [ScreenSummary](https://www.flyrnai.org/screensummary) [[info](/screensummary)] 

    Search and visualize insulin signaling network data 

  [InsulinNet](http://fgrtools.hms.harvard.edu/InsulinNetwork/) [[info](/InsulinNetwork)] 

    Search more than 5 million images from the Neumuller et al. cell screen on nucleolar function at HMS OMERO 

  [Image lookup for image data set at HMS OMERO](https://www.flyrnai.org/tools/drsc_images/web/) 

    Report a software bug, make a suggestion, ask a question 

  [Bug report form](https://hms.az1.qualtrics.com/jfe/form/SV_cApK7Mvnw54HeyV) 

 





 

##  DRSC Tools Notice 

 

 

**Our software tools and databases can help you**

- identify orthologs among yeasts, worm, fly, and vertebrates (e.g. [DIOPT](/diopt))
- identify genes in specific functional groups ([GLAD](/glad))
- identify reagents for functional genomics (e.g. [UP-TORR](/up-torr))
- analyze, integrate, and visualize data (e.g. [COMPLEAT](/compleat), [SignedPPI](/signedppi))
- get support for applications such as [qPCR](/flyprimerbank) or [HRMA](/hrma)

**You can also search and view**

- *in vivo* fly RNAi data at [RSVP](/rsvp)
- DRSC RNAi cell screen data at [Screen Summary](http://www.flyrnai.org/screensummary) or [Gene Lookup](/gene-lookup)
- individual datasets on our [Publications page](/publications-data) (choose [Dataset or data portal](/publications/publication-type/dataset-or-data-portal))
- expression data from modENCODE and others ([DGET](/dget))
- basic info on TRiP fly stocks -- batch query ([TRiP batch query](/trip-fly-stock-batch-query))

[Our 'utility tools' page](/utility-tools) includes batch search tools, common data processing tools, and more.

[Click here for a full list of our bioinformatics-related publications](/publications/publication-type/bioinformatics). Or visit the individual software tool overview pages (left-hand menu) for publications, YouTube demos, and version information.

**Please feel free to [contact us with bug reports, suggestions, or questions](https://hms.az1.qualtrics.com/jfe/form/SV_cApK7Mvnw54HeyV).**

For more online tools relevant to the *Drosophila* community, we recommend visiting the [FlyBase home page](http://flybase.org/) and the [FlyBase resources wiki page](http://flybase.org/wiki/FlyBase:All_Resources). We also recommend checking out [BioSharing.org](https://biosharing.org/), a catalog of bioinformatics databases, and the [GenomeRNAi](http://www.genomernai.org/) database of RNAi screen data.